Publikationen
Publikationsliste des Lehrstuhls
2022
Amélie Luise Godeau, Marco Leoni, Jordi Comelles, Tristan Guyomar, Michele Lieb, Hélène Delanoë-Ayari, Albrecht Ott, Sebastien Harlepp, Pierre Sens, Daniel Riveline
3D single cell migration driven by temporal correlation between oscillating force dipoles
eLife, 11 (2022) e71032
2021
M. Schenkelberger, C. Trapp, T. Mai, V. Giri, M. Mohammadi-Kambs, A. Ott
Ultrahigh molecular recognition specificity of competing DNA oligonucleotide strands in thermal equilibrium: a cooperative transition to order
New Journal of Physics 23, 043044 (2021) 1-22.
N. Khangholi †, M. Finkler †, R. Seemann, A. Ott, J.-B. Fleury
Photoactivation of Cell-Free expressed Archaerhodopsin-3 in a Model Cell Membrane
Int. J. Mol. Sci. 22, 11981 (2021) 1-8.
† geteilte Erstautorenschaft
D. A. D. Flormann, C. Anton, M. O. Pohland, Y. Bautz, K. Kaub, E. Terriac, T. E. Schäffer, J. Rheinlaender, A. Janshoff, A. Ott, F. Lautenschlaeger
Oscillatory microrheology, creep compliance and stress relaxation of biological cells reveal strong correlations as probed by atomic force microscopy
Frontiers in Physics-Biophysics 9, 711860 (2021) 1-12.
M. Finkler, S. Ravanbodshirazi, F. Grimm, P. Hartz, A. Ott.
Full incorporation of the noncanonical amino acid hydroxylysine as a surrogate for lysine in green fluorescent protein.
Bioorg. Med. Chem. 41, 116207 (2021) 1–6.
E. G. Worst †, M. Finkler †, M. Schenkelberger, Ö. Kurt, V. Helms, V. Noireaux, A. Ott.
A Methylation-Directed, Synthetic Pap Switch Based on Self-Complementary Regulatory DNA Reconstituted in an All E. coli Cell-Free Expression System.
ACS Synth. Biol. 10 (2021) 2725–2739.
† Geteilte Erstautorenschaft
2020
M. Finkler, Ö. Kurt, F. Grimm, P. Hartz, A. Ott
A bead-based method for the removal of the amino acid lysine from cell-free transcription-translation systems.
Journal of Biotechnology 324S, 100024 (2020) 1-6.
2019
M. Finkler, A. Ott
Bead-based assay for spatiotemporal gene expression control in cell-free transcription–translation systems BioTechniques
BioTechniques 66(1) (2019) 29
M. Mohammadi-Kambs, A. Ott
DNA oligomer binding in competition exhibits cooperativity
New J. Physics 483 (2019) 113027
2018
E. Wollrab, A. Ott
A Urey-Miller broth mirrors the mass density distribution of all Beilstein indexed organic molecules
New J. Phys. 20 (2018) 105003
P.-H. Wu, D. R. B. Aroush, A. Asnacios, W.-C. Chen, M. E. Dokukin, B. L. Doss, P. Durand-Smet, A. Ekpenyong, J. Guck, N. V. Guz, P. A. Janmey, J. S. H. Lee, N. M. Moore, A. Ott, Y.-C. Poh, R. Ros, M. Sander, I. Sokolov, J. R. Staunton, N. Wang, G. Whyte, D. Wirtz
A comparison of methods to assess cell mechanical properties
Nature Methods 15 (2018) 491
2017
M. Sander, H. Dobicki, A. Ott
Large Amplitude Oscillatory Shear Rheology of Living Fibroblasts: Path-Dependent Steady States
Biophysical Journal 113 (7) (2017) 1561-1573
M. Schenkelberger, S. Shanak, M. Finkler, E. G. Worst, V. Noireaux, V. Helms and A. Ott
Expression regulation by a methyl-CpG binding domain in an E. coli based, cell-free TX-TL system
Phys. Biol. 14 (2) (2017) 1478-3975
M. Mohammadi-Kambs, K. Hölz, M. M. Somoza and A. Ott
Hamming Distance as a Concept in DNA Molecular Recognition
ACS Omega 2 (4) (2017) 1302-1308
2016
S. Scherer, E. Wollrab, L. Codutti, T. Carlomagno, SG. da Costa, A. Volkmer, A. Bronja, OJ. Schmitz and A. Ott
Chemical Analysis of a "Miller-Type" Complex Prebiotic Broth
Part 2: Gas, Oil, Water and the Oil/Water-Interface.
Orig. Life Evol. Biosph. 46 (2-3) (2016) 149-69
E.G. Worst, P. Zimmer, E. Wollrab, K. Kruse and A. Ott
Unbounded growth patterns of reproducing, competing polymers - similarities to biological evolution
New Journal of Physics 18 (2016) 1003003
M.R.Shaebani, A. Pasula, A. Ott and L. Santen
Tracking of plus-ends reveals microtubule functional diversity in different cell types
Scientific Reports 6 (2016) 30285
H. Bokkasam and A. Ott
Information Limited Oligonucleotide Amplification Assay for Affinity-Based, Parallel Detection Studies
PloS ONE Vol. 11(3) (2016) e0151072
E.G. Worst, M.P. Exner, A. De Simone, M. Schenkelberger, V. Noireaux, N. Budisa and A. Ott
Residue-specific incorporation of noncanonical amino acids into model proteins using an Escherichia coli cell-free transcription-translation system
J. Vis. Exp. 114 (2016) 54273
2010-2015
E. G. Worst, M. P. Exner, A. De Simone, M. Schenkelberger, V. Noireaux, N. Budisa and A. Ott
Cell-free expression with the toxic aminoacid canavanine
Bioorganic & Medicinal Chemistry Letters 25(17) (2015) 3658–3660
M. Sander, J. Flesch and A. Ott
Using cell monolayer rheology to probe average single cell mechanical properties
Biorheology 52(4) (2015) 269-278
E. Wollrab, S. Scherer, F. Aubriet, V. Carré, T. Carlomagno, L. Codutti and A. Ott
Chemical Analysis of a "Miller-Type" Complex Prebiotic Broth
Part 1: Chemical Diversity, Oxygen and Nitrogen Based Polymers
Orig. Life Evol. Biosph. 46 (2-3) (2015) 149-169
A. Harrison, H. Binder, A. Buhot, C. J. Burden, E. Carlon, C. Gibas, L. J. Gamble, A. Halverin, J. Hooyberghs, D. P. Kreil, R. Levicky, P. A. Noble, A. Ott, B. M. Pettitt, D. Tautz and A. E. Pozhitkov
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments
Nucleic Acids Research 41 (5) (2013) 2779-96
M. A. Zhukovsky, P.-H. Lee, A. Ott and V. Helms
Putative cholesterol-binding sites in human immunodeficiency virus (HIV) coreceptors CXCR4 and CCR5
Proteins (2012) 24211
A. Gamba, M. Nicodemi, J. Soriano and A. Ott
Critical behavior and axis defining symmetry breaking in hydra embryonic development
Phys. Rev. Lett. 108 (2012) 158103
A. Ott
RNA in cycles
Physics 4 (2011) 52
C. Trapp, M. Schenkelberger and A. Ott
Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study
BMC Biophysics 4 (2011) 20
O. C. Aktas, M. Sander, M. M. Miró, J. Lee, C. K. Akkan, H. Smail, A. Ott and M. Veith
Enhanced fibroblast cell adhesion on Al/Al2O3 nanowires
Rev. of Applied Surface Science 257 (2011) 3489-3494
2005 - 2009
A. Melker and A. Ott (ed.)
Proceedings of the eleventh international workshop on nanodesign, technology and computer simulation
Rev. on Advanced Materials Science 20 (1) (2009)
T. Naiser, J. Kayser, T.Mai, W. Michel and A. Ott
DNA hybridization to surface bound probes: point defects in experiment and model
Phys. Rev. Lett. 102 (2009) 218301
J. Soriano, S. Rüdiger, P.A. Pullarkat and A. Ott
Mechano-genetic coupling of hydra symmetry breaking and driven turing instability model
Biophysical Journal 96(4) (2009) 1649-1660
T. Naiser, O. Ehler, J. Kayser, T. Mai, W. Michel and A. Ott
Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: comparison of single base mismatch and base bulges
BMC Biotechnology 8 (2008) 48
T. Naiser, J. Kayser, T. Mai, W. Michel and A. Ott
Position dependent mismatch discrimination on DNA microarrays - experiments and model
BMC Bioinformatics 9 (2008) 509
P. Fernandez and A. Ott
Single cell mechanics: stress stiffening and kinematic hardening
Phys. Rev. Lett. 100 (2008) 238102
M. Kücken, J. Soriano, P. A. Pullarkat, A. Ott and E. M. Nicola
An osmoregulatory basis for shape oscillations in regenerating hydra
Biophysical Journal 95 (2008) 978-985
N. Aksel, P. Fernandez, L. Heyman, A. Ott and P. Pullarkat
Biological cell monolayer shearing apparatus for diagnostic purposes
Patent application EP 07 114 178.2 (filed 2008)
R. Bernal, P. Pullarkat and F. Melo
Mechanical properties of axons
Phys. Rev. Lett 99 (2007) 018301
P. Fernandez, L. Heyman, A. Ott, N. Aksel and P. Pullarkat
Shear rheology of a cell monolayer
New Journal of Physics 9 (2007) 419
P. Pullarkat, P. Fernandez and A. Ott
Rheological properties of the eukaryotic cell cytoskeleton
Physics Reports 449 (2007) 29-53
W. Michel, T. Mai, T. Naiser and A. Ott
Optical study of DNA suface hybridization reveals DNA surface density as a key parameter for microarray hybridization kinetics
Biophysical Journal 92 (2007) 999-1004
G. Salbreux, J. F. Joanny, J. Prost and P. Pullarkat
Shape oscillations of non-adhering fibroblast cells
Phys. Biol. 4 (2007) 268-284
J. Soriano, C. Colombo and A. Ott
Hydra molecular network reaches critcality at the symmetry-breaking axis defining moment
Phys. Rev. Lett. 97 (2006) 258102
T. Naiser, T. Mai, W. Michel and A. Ott
Versatile maskless microscope projection photolithography system and its apllication in light-directed fabrication of DNA microarrays
Rev. Sci. Instrum. 77 (2006) 063711
P. Pullarkat, P. Dommersnes, P. Fernandez, J.-F. Joanny and A. Ott
Osmotically driven shape transformations in axons
Phys. Rev. Lett. 96 (2006) 048104
P. Fernandez, P. Pullarkat and A. Ott
A master realation defines the nonlinear viscoelasticity of single fibroplasts
Biophysical Journal 90 (2006) 3796-3805
S. Thakur, P. B. Sunil Kumar, N. V. Madhusudana and P. Pullarkat
Self propulsion of nematic drops: novel phase seperation dynamics in impurity doped nematogens
Phys. Rev. Let. 97 (2006) 115701
A. Micoulet, J. P. Spatz and A. Ott
Mechanical response analysis and power generation of a single-cell stretching
ChemPhysChem 6 (2005) 663-670
2000 - 2004
C. Fütterer, C. Colombo, F. Jülicher and A. Ott
Morphogenic oscillations during symmetry breaking of regenerating hydra vulgaris cells
Europhys. Lett 64 (2003) 137
L. Busoni, G. Cappello, M. Badoual, A. Ott and J. Prost
Kinesin motion in the absence of external forces characterized by interference total internal reflection microscopy
Phys. Rev. E 68 (2003) 021907
F. Gerbal, V. Laurent, A. Ott, M. F. Carlier, P. Chaikin, J. Prost
Measurements of the elasticity of the actin tail of „listeria“ monocytogenes
European Biophysics Journal 29/2 (2000) 134-140
1995 - 1999
A. Ott
The molecular motor actin-myosin on a substrat
Lecture notes in Physics, Springer Verlag (1999) BFb0104220
F. Gerbal, V. Noireaux, C. Sykles, F. Jülicher, P. Chaikin, A. Ott, J.Prost, R. Goldstein, E. Friedrich, D. Louvard, V. Laurant and M. F. Carlier
On the "listeria" propulsion mechanism
Pramana 53 1 (1999) 155-170
O. Thoumine and A. Ott
Biomechanical properties of fibroblast
Material Research Society Bulletin 24 (1999) 22-26
A. Ott
Derniers développements et applications de pinces optiques
J. Phys. IV France 9 (1999) 109-112
I. Gutsche Perelroizen, J. Lapault, A. Ott and M. F. Carlier
Filament assembly from profilin-actin
J. Bio. Chem. 274 (1999) 6234-6243
O. Thoumine, A. Ott, O. Cardoso and J. J. Meister
Microplates: a new tool for manipulation and mechanical perturbation of individual cells
J. Biochem. Biophys. Methods 39 (1999) 47-62
D. Riveline, A. Ott, F. Jülicher, O. Cardoso, S. Magnusdottir, J. L. Viovy and J. Prost
Acting on actin: the electric motility assay
Eur. Biophys. J. 27 (1998) 403-408
C. H. Wiggins, D. Riveline, A. Ott and R. E. Goldstein
Trapping and wiggling: elastohydrodynamics of driven microfilaments
Biophys. J. 74 (1998) 1043-1060
O. Thoumine and A. Ott
Comparison of the mechanical properties of normal and transformed fibroblasts
Biorheology 34 (1997) 309-326
D. Riveline, C. H. Wiggins, R. E. Goldstein and A. Ott
Elastohydrodynamic study of actin filaments using fluorescence microscopy
Phys. Rev. E 56 (1997) R1330-R1333
O. Thourmine and A. Ott
Time scale dependent viscoelastic and contractile regimes in fibroblasts probed by microplate manipulation
J. Cell Sci. 110 (1997) 2109-2116
A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach
Collective diffusion of "living polymers"
J. Phys. II (France) 7 (1997) 1099-1109
O. Thourmine and A.Ott
Influence of adhesion and cytoskeletal intergrity on fibroblast traction
Cell Mot. Cyt. 35 (1996) 269-280
A. Ott
Micromanipulation intracellulaire par princes optiques
Ann. Phys. Fr. 22 (1997) 181-182
O. Thourmine, A. Ott and D. Louvard
Critical centrifugal forces induce adhesion, rupture or structural reorganization in cultured cells
Cell Mot. Cyt. 33 (1996) 276-287
D. A. Winkelmann, L. Bourdieu, A. Ott, F. Kinose and A. Libchaber
Flexibility of myosin attachment to surface influences f-actin motion
Biophys. J. 68 (1995) 2444-2453
1990 - 1994
A. Ott, M. Magnasco, A. Simon and A. Libchaber
Measurement of the persistence length of filamentous actin using fluorescence microscopy
Phys. Rev. E 48 (1993) R1642
N. Morié, A. Ott, D. Langevin and W. Urbach
Comments on the selfdiffusion in L3 and other bicontinuous surfactant solutions
Langmuir 9 (2) (1993) pp 625-626
A. Khatory, F. Kern, F. Lequeux, J. Apel, G. Porte, N. Moire, A. Ott and W. Urbach
Entangeld versus multiconnected network of wormlike micelles
Langmuir 9 (1993) 933-939
A. Ott, W. Urbach, D. Langevin and H. Hoffmann
Surface self-diffusion in L3 phases
Langmuir 8 (2) (1992) 345
A. Ott, W. Urbach, L. T. Lee and D. Langevin
Thermal fluctuations of surfactant films in micellar and microemulsion systems
Langmuir 7 (1991) 1892-1894
A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach
Anomalous diffusion in elongated micelles and its Levy flight interpreation
J. Phys. II France 1 (1991) 1465-1482
A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach
Les vols de Levy ou la diffusion non brownienne
La Recherche 230 (1991) 378
A. Ott
Etudes des agrégats de molécules amphiphiles par des technique optiques. Cas des agrégats flexibles et rôle des fluctuations thermiques
Thèse Université de Paris VI (1990)
A. Ott, J. P. Bouchaud, D. Langevin and W. Urbach
Anomalous diffusion in living polymers: a genuine Levy flight?
Phys. Rev. Lett. 65 (1990) 2201
A. Ott, W. Urbach, D. Langevin, P. Schurtenberger, R. Scartazzini and P. L. Luisi
A self-diffusion study of polymer-like micelles
J. Phys. Condens. Matter 2 (1990) 5907
A. Ott, W. Urbach, D. Langevin, R. Ober and M. Waks
Light Scattering study of surfactant multilayers elasticity. Role of incorporated proteins
Europhys. Lett. 12 (1990) 395
1985 - 1989
R. Messager, A. Ott, D. Chatenay and D. Langevin
Self diffusion in living polymers
Polym. Prepr. (ACS Div. Pol. Chem.) 29 (1988) 393
R. Messager, A. Ott, D. Chatenay, W. Urbach and D. Langevin
Are giant micelles living polymers?
Phys. Rev. Lett. 60 (1988) 1410